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geo data
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GEOquery Fails to Download Series Matrix File
geoquery
ncbi geo
geo data
7.5 years ago
fongchunchan
▴ 30
1
vote
1
reply
1.3k
views
GEOquery: Diagnosing SOFT file error
geoquery
geo data
geo
soft files
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
supermanrocketboy
▴ 10
0
votes
3
replies
1.6k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
8.6 years ago
sz
• 0
0
votes
2
replies
1.3k
views
WGCNA analysis with NCBI GEO Series Matrix file?
WGCNA
geo data
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
mathavanbioinfo
▴ 20
4 results • Page
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Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Vincent J. Carey, Jr.
6.7k
btw that was run on M1 mac
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Vincent J. Carey, Jr.
6.7k
the test is not portable > aa <- aa_mutmat(acc = "MIYS930101", aaindex = "aaindex2") > str(aa) num [1:20, 1:20] 0.34 -0.0…
Comment: Method to find pathways different between 2 groups
by
Chris
• 0
Sorry for not clear. I just try to find papers use this method for learning purpose. Which gives more context and detail examples, so I may…
Comment: Improving the design matrices vignette in RNAseq123
by
Lluís Revilla Sancho
▴ 730
Cool. Thanks for looking into it.
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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